You're reading the documentation for a development version. For the latest released version, please have a look at v0.8.12.
CADET-Match uses a JSON based configuration file format. CADET-Match uses jstyleson to support JSON with comments. You can programatically create the JSON in Python using nested dictionaries or addict and then convert to JSON.
Ususally, the configuration has to include:
Basic setup of CADET-Match
Connection with experimental data
Configuration of features and scores
Creation of reference model
Seting up parameters (including transforms)
Configuration of search algorithm
In this section, the general structure of the CADET-Match configuration is described. For more information, see also the examples.
- Basic setup
- Error Modeling