You're reading the documentation for a development version. For the latest released version, please have a look at v0.8.12.

Basic setup

All paths and directories in the JSON file MUST use / and not \. This means paths on Windows need to be converted from C:\foo\bar to C:/foo/bar.

Key

Values

Default

Required

Description

CADETPath

Path

None

Yes

Path to the CADET binary or shared library

baseDir

Path

None

No

If baseDir is given then all other paths are evaluated relative to baseDir

resultsDir

Path

None

Yes

Specifies where the results will be stored

checkpointFile

Path

“check”

No

Specifies the name of the checkpointFile. This is very rarely needed.

CSV

Path

“results.csv”

No

Species the name of the main results file.

metaResultsOnly

Boolean

True

No

Species if the full pareto front simulations should be kept and graphed or only the meta front.

normalizeOutput

Boolean

True

No

Normalize from 0 to 1 all input data and chromatograms

{
"CADETPath": "/home/myhome/bin/cadet-cli",
"baseDir": "/home/myhome/data",
"resultsDir": "results1",
"checkpointFile": "checkpoint",
"CVS": "bypass_experiment.csv",
"metaResultsOnly": 1,
"normalizeOutput": 1
}