.. _configuration: Configuration ------------- CADET-Match uses a JSON based configuration file format. CADET-Match uses `jstyleson `_ to support JSON with comments. You can programatically create the JSON in Python using nested dictionaries or `addict `_ and then convert to JSON. Ususally, the configuration has to include: * Basic setup of CADET-Match * Connection with experimental data * Configuration of features and scores * Creation of reference model * Seting up parameters (including transforms) * Configuration of search algorithm In this section, the general structure of the CADET-Match configuration is described. For more information, see also the examples. .. toctree:: basic_config experiments scores transform search error graphing misc