Basic setup ^^^^^^^^^^^ All paths and directories in the JSON file MUST use `/` and not `\\`. This means paths on Windows need to be converted from `C:\\foo\\bar` to `C:/foo/bar`. =================== =========== ================ ========== ================================================================================================= Key Values Default Required Description =================== =========== ================ ========== ================================================================================================= CADETPath Path None Yes Path to the CADET binary or shared library baseDir Path None No If baseDir is given then all other paths are evaluated relative to baseDir resultsDir Path None Yes Specifies where the results will be stored checkpointFile Path "check" No Specifies the name of the checkpointFile. This is very rarely needed. CSV Path "results.csv" No Species the name of the main results file. metaResultsOnly Boolean True No Species if the full pareto front simulations should be kept and graphed or only the meta front. normalizeOutput Boolean True No Normalize from 0 to 1 all input data and chromatograms =================== =========== ================ ========== ================================================================================================= .. code-block:: json { "CADETPath": "/home/myhome/bin/cadet-cli", "baseDir": "/home/myhome/data", "resultsDir": "results1", "checkpointFile": "checkpoint", "CVS": "bypass_experiment.csv", "metaResultsOnly": 1, "normalizeOutput": 1 }